@misc{Błażewicz_Jacek_Some,
 author={Błażewicz, Jacek and Formanowicz, Piotr and Wojciechowski, Paweł},
 howpublished={online},
 publisher={Zielona Góra: Uniwersytet Zielonogórski},
 language={eng},
 abstract={BAliBASE is one of the most widely used benchmarks for multiple sequence alignment programs. The accuracy of alignment methods is measured by bali score - an application provided together with the database. The standard accuracy measures are the Sum of Pairs (SP) and the Total Column (TC). We have found that, for non-core block columns, results calculated by bali score are different from those obtained on the basis of the formal definitions of the measures.},
 abstract={We do not claim that one of these measures is better than the other, but they are definitely different. Such a situation can be the source of confusion when alignments obtained using various methods are compared. Therefore, we propose a new nomenclature for the measures of the quality of multiple sequence alignments to distinguish which one was actually calculated. Moreover, we have found that the occurrence of a gap in some column in the first sequence of the reference alignment causes column discarding.},
 type={artykuł},
 title={Some remarks on evaluating the quality of the multiple sequence alignment based on the BAliBASE benchmark},
 keywords={multiple sequence alignment, reference alignment, alignment accuracy},
}