Obiekt
Tytuł: Some remarks on evaluating the quality of the multiple sequence alignment based on the BAliBASE benchmark
Współtwórca:
Podtytuł:
Tytuł publikacji grupowej:
Abstract:
BAliBASE is one of the most widely used benchmarks for multiple sequence alignment programs. The accuracy of alignment methods is measured by bali score - an application provided together with the database. The standard accuracy measures are the Sum of Pairs (SP) and the Total Column (TC). We have found that, for non-core block columns, results calculated by bali score are different from those obtained on the basis of the formal definitions of the measures. ; We do not claim that one of these measures is better than the other, but they are definitely different. Such a situation can be the source of confusion when alignments obtained using various methods are compared. Therefore, we propose a new nomenclature for the measures of the quality of multiple sequence alignments to distinguish which one was actually calculated. Moreover, we have found that the occurrence of a gap in some column in the first sequence of the reference alignment causes column discarding.
Wydawca:
Zielona Góra: Uniwersytet Zielonogórski
Identyfikator zasobu:
DOI:
Strony:
Źródło:
AMCS, volume 19, number 4 (2009) ; kliknij tutaj, żeby przejść
Jezyk:
Prawa do dysponowania publikacją:
Biblioteka Uniwersytetu Zielonogórskiego
Kolekcje, do których przypisany jest obiekt:
- Zielonogórska Biblioteka Cyfrowa > Repozytorium > Jednostki organizacyjne > Wydział Informatyki, Elektrotechniki i Automatyki
- Zielonogórska Biblioteka Cyfrowa > Repozytorium > Typy utworów > Artykuły
- Zielonogórska Biblioteka Cyfrowa > Repozytorium > Czasopisma naukowe i serie wydawnicze UZ > International Journal of Applied Mathematics and Computer Science (AMCS) > International Journal of Applied Mathematics and Computer Science (AMCS) (2009)
Data ostatniej modyfikacji:
2024-04-10
Data dodania obiektu:
2024-04-10
Liczba wyświetleń treści obiektu:
59
Wszystkie dostępne wersje tego obiektu:
https://zbc.uz.zgora.pl/publication/88595
Wyświetl opis w formacie RDF:
Wyświetl opis w formacie OAI-PMH:
-
International Journal of Applied Mathematics and Computer Science (AMCS)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 26 (2016)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 25 (2015)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 24 (2014)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 23 (2013)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 22 (2012)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 21 (2011)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 20 (2010)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 19 (2009)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 19, number 1 (2009)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 19, number 2 (2009)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 19, number 3 (2009)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 19, number 4 (2009)
- Approximation of Jacobian inverse kinematics algorithms
- Motion planning and feedback control for a unicycle in a way point following task: The VFO approach
- Trajectory tracking for a mobile robot with skid-slip compensation in the vector-field-orientation control system
- On path following control of nonholonomic mobile manipulators
- Simultaneous localization and mapping: A feature-based probabilistic approach
- Controllability of nonlinear impulsive Ito type stochastic systems
- Time-optimal control of infinite order hyperbolic systems with time delays
- Zeros in linear systems with time delay in state
- Indirect adaptive controller based on a self-structuring fuzzy system for nonlinear modeling and control
- Recursive identification algorithm for dynamic systems with output backlash and its convergence
- A matrix inequality based design method for consensus problems in multi-agent systems
- Synthesis of finite state machines for CPLDs
- The steady-state impedance operator of a linear periodically time-varying one-port network and its determination
- Some remarks on evaluating the quality of the multiple sequence alignment based on the BAliBASE benchmark
- An automatic segmentation method for scanned images of wheat root systems with dark discolourations
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 19, number 1 (2009)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 18 (2008)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 17 (2007)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 16 (2006)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 15 (2005)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 13 (2003)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 12 (2002)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 11 (2001)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 10 (2000)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 9 (1999)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 8 (1998)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 7 (1997)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 6 (1996)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 5 (1995)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 4 (1994)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 3 (1993)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 2 (1992)
-
International Journal of Applied Mathematics and Computer Science (AMCS),volume 1 (1991)
-
International Journal of Applied Mathematics and Computer Science (AMCS), volume 26 (2016)
| Nazwa wydania | Data |
|---|---|
| Some remarks on evaluating the quality of the multiple sequence alignment based on the BAliBASE benchmark | 2024-04-10 |
